Phylogenomics

Genomics and morphometrics reveal the adaptive evolution of pikas

Pikas (Lagomorpha: Ochotonidae) are small mouse-like lagomorphs. To investigate their adaptation to different ecological environments during their dispersal from the Qinghai-Xizang (Tibet) Plateau (QTP), we collected 226 pikas and measured 20 …

The chromosome-scale genome of Phoebe bournei reveals contrasting fates of terpene synthase (TPS)-a and TPS-b subfamilies

Terpenoids, including aromatic volatile monoterpenoids and sesquiterpenoids, function in defense against pathogens and herbivores. Phoebe trees are remarkable for their scented wood and decay resistance. Unlike other Lauraceae species investigated to …

基于转录组数据和短序列测序的系统发育研究方法 (Phylogenomics based on transcriptomics and short-read sequences)

## 摘要 明确的系统发育关系 (phylogeny) 是分类学、进化事件的推断及时间校正、相关性状的祖先状态构建等的重要基础和前提。在明确了不同支系的系统发育关系的前提下,通过分析比较性状在不同类群中的演化历史,可以了解物种经受了哪些选择压力,不同性状是否倾向于共同演化或只是对相同选择压力的适应。自高通量短序列测序技术出现以后,通过广泛采样及使用大规模数据集来研究不同类群的系统发育关系的方法已经成为共识。但由于大规模全基因组测序成本高、分析难度大,简化基因组测序仍具有广泛应用前景。其中,利用转 …

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

## Highlights - Analysis of genomes from all five extant and three extinct rhinoceros species - Strong phylogenomic support for the geographical hypothesis of rhinoceros evolution - Basal split between African and Eurasian lineages in the early …

Phylogeny and Sex Chromosome Evolution of Palaeognathae

Many paleognaths (ratites and tinamous) have a pair of homomorphic ZW sex chromosomes in contrast to the highly differentiated sex chromosomes of most other birds. To understand the evolutionary causes for different tempo of sex chromosome evolution, …

Dense sampling of bird diversity increases power of comparative genomics

Whole-genome sequencing projects are increasingly populating the tree of life and characterizing biodiversity. Sparse taxon sampling has previously been proposed to confound phylogenetic inference5, and captures only a fraction of the genomic …

Four myriapod relatives – but who are sisters? No end to debates on relationships among the four major myriapod subgroups

## Background Phylogenetic relationships among the myriapod subgroups Chilopoda, Diplopoda, Symphyla and Pauropoda are still not robustly resolved. The first phylogenomic study covering all subgroups resolved phylogenetic relationships congruently to …

Phylogenomic analysis sheds new light on the evolutionary pathways towards acoustic communication in Orthoptera

Acoustic communication is enabled by the evolution of specialised hearing and sound producing organs. In this study, we performed a large-scale macroevolutionary study to understand how both hearing and sound production evolved and affected …

Book chapter: From reads to Genes

Book name: Transcriptomics in entomological research While "genomics" is becoming a household term, knowing the genome of an organism alone provides relatively little information. Between the genome and the final organism is the "transcriptome" that …

Out of the Qinghai-Tibetan Plateau and get flourishing - the evolution of Neodon voles (Rodentia: Cricetidae) revealed by systematic sampling and low coverage whole genome sequencing

*Neodon*, genus of a short time evolutionary history, was reported to be diverged from its relatives in early stage of Pleistocene. Only 4 species were well documented in *Neodon* for a long period of time until last years when a systematic work …